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DNA contig assembly

454 SFF viewer/converto tool

The way the bioinformatics should be...

 

 

 


Program description

 

454 SFF Workbench is an easy to use SFF file viewer, editor and converter. SFF Workbench is the first and only SFF editor with graphic interface on the entire bioinformatics market! With this tool we wanted to help the biologists to concentrate on their work instead of wasting time poking obscure commands in a console.

 

 

Features

 

SFF Viewer:

  • Display SFF file details (size, total number of samples/reads, key sequence, flow characters)
  • Display Roche details (index, manifest)
  • Display the average quality of each sample (before and after end trimming)
  • Display the sample length (before and after end trimming)
  • Display quality values
  • Display low quality/clipped ends in gray color
  • User-friendly graphic interface. Compact/portable (no installation required, no admin password required
  • Easy to use file browser (allows you to quickly locate and view SFF files)

SFF Editor:

  • Split huge FastQ/SFF file in chunks of x reads
  • Convert SFF to FastQ
  • Convert SFF to Fasta
  • Convert FastQ to Fasta (multiFasta)
  • Trim poly-A/T tails
  • Cut reads with average QV under specified threshold
  • Cut reads if they contain N bases (the user can specify how many)
  • Cut reads that are too short
  • Cut reads that are too long
  • Cut low complexity reads
  • Trim low quality ends. Automatically detect and cut low quality bases at the end of each read.
  • Split multiplexed files (MID/Barcode splitter)
  • Dereplicate sequences

Performance:

454 SFF Workbench loads a 400MB SFF file (containing over 122000 samples) in only 2.5 seconds. It requires only 34MB of memory to display the entire content of the file. The test was performed on a Intel i5 @2.2 GHz, 3GB or RAM, low end hard drive running Windows 7.

 

Wildbillsuddervalleyranchtube Updated ((full)) -

The search term "Wild Bill's Udder Valley Ranch" refers to a series of niche adult films produced primarily in the late 1980s and throughout the 1990s. Managed by a producer often referred to as "Wild Bill," the production company became known for a specific aesthetic and focus within the adult entertainment industry. History and Production Style

Enthusiasts of vintage adult media often discuss the history of the ranch and the availability of specific titles on various collector forums.

Occasionally, older titles are re-released in higher resolution formats by companies that specialize in archiving vintage adult entertainment. Current Status wildbillsuddervalleyranchtube updated

New productions under the "Udder Valley Ranch" name ceased many years ago. The original creator is widely believed to have retired from the industry, leaving the brand to exist primarily as a historical footnote for fans of vintage niche media. The current availability of the content is largely dependent on third-party digital archives and private collections.

The series originated during the height of the home video era. It was characterized by a "homegrown" or amateur production style, which stood in contrast to the more polished, high-budget productions of major adult film studios at the time. The content typically featured models in rural or ranch settings, focusing on specific physical attributes that catered to a niche audience. The Transition to Digital The search term "Wild Bill's Udder Valley Ranch"

Various adult video hosting sites have digitized portions of the original library.

With the decline of physical media such as VHS and DVD, much of the "Udder Valley Ranch" catalog transitioned to digital formats. Online searches for "updated" content or "tube" versions usually lead to digital archives where vintage adult content is hosted. The current availability of the content is largely

While the official website associated with these productions has been inactive for many years, the legacy of the series persists through:


More screenshots...

Do you want to see more screenshots? Then click here.


SFF file viewer, SFF editor, SFF to FASTA converter

 

 

Download

Name SFF Workbench
Version 1.5.1
Date 11.2013
Package size ~ 6 MB
Download time less than 10 seconds (for DSL)

SFF converter - Free download

NOTE! This tool has been replaced by
NextGen SFF/FastQ Workbench

 

 

What's new in this version...

News: The speed and memory requirements have been dramatically improved since v1.0! Opening 2GB files requires less than 80MB or RAM.


What's in the package/How to install it...

SFF Workbench is delivered in a small package together with other free molecular biology tools. Download the package and double click it. The programs inside the package will be extracted to the destination folder (specified by you). Go to the destination folder and double click the program you want to use.

SFF Workbench installs in any computer even if you don't have administrator rights. To uninstall SFF Workbench, just delete it.


How to use it...

A small introduction on how to use the program is available here.

Please note that the demo version of the program will not process all reads in a SFF file. Upon program registration this limitation will be removed.


Portability...

This software tool is really small so you can easily copy it on a floppy disk or USB flash stick and take it with you or send it to your colleagues via email.


Instant feedback...

Please help us make SFF Workbench better. Let us know if you have any feature requests and we will try to integrate them.

 

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